Variables in DALEC 1100 ======================= .. toctree:: :maxdepth: 2 Variables used in DALEC model .. list-table:: Input variables :widths: 1 1 1 1 1 :header-rows: 1 * - Abbreviation - Description - Units - Code string - Notes * - :math:`SSRD` - Downwelling shortwave radiation - J m\ :sup:`-2` d\ :sup:`-1` - ``SSRD`` - * - :math:`STRD` - Downwelling longwave radiation - J m\ :sup:`-2` d\ :sup:`-1` - ``STRD`` - * - :math:`T_{min}` - Minimum temperature - K - ``T2M_MIN`` - Mean of daily minimum temperature over time step * - :math:`T_{max}` - Maximum temperature - K - ``T2M_MAX`` - Mean of daily maximum temperature over time step * - :math:`T_{skin}` - Skin temperature - K - ``SKT`` - * - :math:`P_{tot}` - Total precipitation - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``PREC`` - Includes rain and snowfall * - :math:`P_{snow}` - Snowfall - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``SNOWFALL`` - Must be less than or equal to :math:`P_{tot}` * - :math:`VPD` - Vapor pressure deficit - mPa - ``VPD`` - * - :math:`CO2` - Atmospheric CO\ :sub:`2` concentration - ppm - ``CO2`` - * - :math:`BA` - Burned area - m\ :sup:`2` m\ :sup:`-2` - ``BURNED_AREA`` - * - :math:`DIST` - Non-fire distirbance - gC m\ :sup:`-2` d\ :sup:`-1` - ``DIST`` - * - :math:`YIELD` - Yield - ??? - ``YIELD`` - .. list-table:: Prognostic variables (pools) :widths: 1 1 1 1 1 1 1 :header-rows: 1 * - Abbreviation - Description - Units - Fluxes/forcing in - Fluxes out - Code string - Notes * - :math:`C_{lab}` - Labile carbon (non-structural carbohydrate) - gC m\ :sup:`-2` - :math:`GPP` - :math:`Ra_{dark}`, :math:`Ra_{maint}`, :math:`Ra_{gr}`, :math:`PRD_{fol}`, :math:`PRD_{roo}`, :math:`PRD_{woo}`, :math:`DEC_{lab}`, :math:`DIS_{lab}`, :math:`FIR_{lab}`, :math:`FIRx_{lab}` - ``C_lab`` - * - :math:`C_{fol}` - Foliar carbon - gC m\ :sup:`-2` - :math:`PRD_{fol}` - :math:`DEC_{fol}`, :math:`DECph_{fol}`, :math:`FIR_{fol}`, :math:`FIRx_{fol}`, :math:`DIS_{fol}` - ``C_fol`` - * - :math:`C_{woo}` - Wood/ligneous carbon - gC m\ :sup:`-2` - :math:`PRD_{woo}` - :math:`DEC_{woo}`, :math:`FIR_{woo}`, :math:`FIRx_{woo}`, :math:`DIS_{woo}` - ``C_woo`` - Includes woody root biomass * - :math:`C_{roo}` - Fine root carbon - gC m\ :sup:`-2` - :math:`PRD_{roo}` - :math:`DEC_{roo}`, :math:`FIR_{roo}`, :math:`FIRx_{roo}`, :math:`DIS_{roo}` - ``C_roo`` - Does not include woody root biomass * - :math:`C_{lit}` - Litter carbon - gC m\ :sup:`-2` - **add yield** :math:`DEC_{lab}`, :math:`DEC_{fol}`, :math:`DECph_{fol}`, :math:`DEC_{roo}`, :math:`FIRx_{lab}`, :math:`FIRx_{fol}`, :math:`FIRx_{roo}` - **add yield** :math:`RhAe_{lit}`, :math:`RhAn_{lit}`, :math:`DEC_{lit}`, :math:`FIR_{lit}`, :math:`FIRx_{lit}` - ``C_lit`` - * - :math:`C_{cwd}` - Coarse woody debris carbon - gC m\ :sup:`-2` - **add yield** :math:`DEC_{woo}`, :math:`FIR_{woo}` - :math:`RhAe_{cwd}`, :math:`RhAn_{cwd}`, :math:`DEC_{cwd}`, :math:`FIR_{cwd}`, :math:`FIRx_{cwd}`:math:`RhAe_{cwd}`, :math:`RhAn_{cwd}`, :math:`DEC_{cwd}`, :math:`FIR_{cwd}`, :math:`FIRx_{cwd}` - ``C_cwd`` - * - :math:`C_{som}` - Soil organic matter carbon - gC m\ :sup:`-2` - :math:`DEC_{lit}`, :math:`FIRx_{lit}`, :math:`DEC_{cwd}`, :math:`FIRx_{cwd}`, - :math:`RhAe_{som}`, :math:`RhAn_{som}`, :math:`FIR_{som}` - ``C_som`` - * - :math:`W_{ly1}` - Layer 1 water - mmH\ :sub:`2`\ O - :math:`Qx_{inf}` - :math:`Ev`, :math:`Tr_{ly1}`, :math:`Q_{ly1}`, :math:`Qx_{ly1,2}` - ``H2O_LY1`` - * - :math:`W_{ly2}` - Layer 2 water - mmH\ :sub:`2`\ O - :math:`Qx_{ly1,2}` - :math:`Tr_{ly2}`, :math:`Q_{ly2}`, :math:`Qx_{ly2,3}` - ``H2O_LY2`` - * - :math:`W_{ly3}` - Layer 3 water - mmH\ :sub:`2`\ O - :math:`Qx_{ly2,3}` - :math:`Q_{ly3}` - ``H2O_LY3`` - * - :math:`W_{swe}` - Snow water equivalent - mmH\ :sub:`2`\ O - :math:`P_{snow}` - :math:`Melt`, :math:`Subl` - ``H2O_SWE`` - * - :math:`E_{ly1}` - Energy content of :math:`W_{ly1}` - J m\ :sup:`-2` - :math:`E_{gh}`, :math:`EQx_{inf}` - :math:`EEv`, :math:`ETr_{ly1}`, :math:`EQ_{ly1}`, :math:`EQx_{ly1,2}`, :math:`EQthx_{ly1,2}` - ``E_LY1`` - * - :math:`E_{ly2}` - Energy content of :math:`W_{ly2}` - J m\ :sup:`-2` - :math:`EQx_{ly1,2}`, :math:`EQthx_{ly1,2}` - :math:`ETr_{ly2}`, :math:`EQ_{ly2}`, :math:`EQx_{ly2,3}`, :math:`EQthx_{ly2,3}` - ``E_LY2`` - * - :math:`E_{ly3}` - Energy content of :math:`W_{ly3}` - J m\ :sup:`-2` - :math:`E_{geo}`, :math:`EQx_{ly2,3}`, :math:`EQthx_{ly2,3}` - :math:`EQ_{ly3}` - ``E_LY3`` - .. list-table:: Diagnostic variables :widths: 1 1 1 1 1 :header-rows: 1 * - :math:Abbreviation - Description - Units - Code string - Notes * - :math:`LAI` - Leaf area index - m\ :sup:`2` m\ :sup:`-2` - ``D_LAI`` - * - :math:`SCF` - Snow covered fraction - 1 - ``D_SCF`` - Fraction of non-vegetation-covered land surface (gap fraction) that is covered by a layer of snow. * - :math:`T_{ly1}` - :math:`W_{ly1}` temperature - K - ``D_TEMP_LY1`` - * - :math:`T_{ly2}` - :math:`W_{ly2}` temperature - K - ``D_TEMP_LY2`` - * - :math:`T_{ly3}` - :math:`W_{ly3}` temperature - K - ``D_TEMP_LY3`` - * - :math:`LF_{ly1}` - :math:`W_{ly1}` liquid fraction - 1 - ``D_LF_LY1`` - Ratio of liquid water to total water in layer 1 * - :math:`LF_{ly2}` - :math:`W_{ly2}` liquid fraction - 1 - ``D_LF_LY2`` - Ratio of liquid water to total water in layer 2 * - :math:`LF_{ly3}` - :math:`W_{ly3}` liquid fraction - 1 - ``D_LF_LY3`` - Ratio of liquid water to total water in layer 3 * - :math:`\theta_{ly1}` - :math:`W_{ly1}` soil moisture - 1 - ``D_SM_LY1`` - Ratio of total water to pore space in layer 1 * - :math:`\theta_{ly2}` - :math:`W_{ly2}` soil moisture - 1 - ``D_SM_LY2`` - Ratio of total water to pore space in layer 2 * - :math:`\theta_{ly3}` - :math:`W_{ly3}` soil moisture - 1 - ``D_SM_LY3`` - Ratio of total water to pore space in layer 3 * - :math:`\Psi_{ly1}` - :math:`W_{ly1}` water potential - MPa - ``D_PSI_LY1`` - * - :math:`\Psi_{ly2}` - :math:`W_{ly2}` water potential - MPa - ``D_PSI_LY2`` - * - :math:`\Psi_{ly3}` - :math:`W_{ly3}` water potential - MPa - ``D_PSI_LY3`` - .. POOLS_INFO.NAME[S.M_LAI_MAX]='Past Maximum Leaf Area Index in vegetation memory'; .. POOLS_INFO.ABBREVIATION[S.M_LAI_MAX]='M_LAI_MAX'; .. POOLS_INFO.UNITS[S.M_LAI_MAX]='m2/m2'; .. POOLS_INFO.DESCRIPTION[S.M_LAI_MAX]='Exponentially declining term encoding vegetation \'memory\' of past water/structural limitations for LAI, to capture lagged effects of past stress.'; .. POOLS_INFO.NAME[S.M_LAI_TEMP]='Past Leaf temperature in vegetation memory'; .. POOLS_INFO.ABBREVIATION[S.M_LAI_TEMP]='M_LAI_TEMP'; .. POOLS_INFO.UNITS[S.M_LAI_TEMP]='K'; .. POOLS_INFO.DESCRIPTION[S.M_LAI_TEMP]='Exponentially declining term encoding vegetation \'memory\' of past temperature limitations for LAI, to capture lagged effects of past stress.'; .. list-table:: Fluxes :widths: 1 1 1 1 1 :header-rows: 1 * - Abbreviation - Description - Units - Code string - Notes * - :math:`GPP` - Gross primary production - gC m\ :sup:`-2` d\ :sup:`-1` - ``gpp`` - Gross C assimilation, without leaf maintenance respiration removed * - :math:`GPP_{net}` - Net gross primary production - gC m\ :sup:`-2` d\ :sup:`-1` - ``gppnet`` - Net :math:`GPP` after removing leaf maintenance respiration, same as labile production * - :math:`PRD_{lab}` - Labile production - gC m\ :sup:`-2` d\ :sup:`-1` - ``lab_prod`` - Same as :math:`GPP_{net}` (flagged for removal) * - :math:`PRD_{fol}` - Foliar production - gC m\ :sup:`-2` d\ :sup:`-1` - ``foliar_prod`` - * - :math:`PRD_{roo}` - Fine root production - gC m\ :sup:`-2` d\ :sup:`-1` - ``root_prod`` - * - :math:`PRD_{woo}` - Wood and coarse root production - gC m\ :sup:`-2` d\ :sup:`-1` - ``wood_prod`` - * - :math:`Ra_{gr}` - Autotrophic growth respiration - gC m\ :sup:`-2` d\ :sup:`-1` - ``resp_auto_growth`` - * - :math:`Ra_{dark}` - Autotrophic maintenance dark respiration - gC m\ :sup:`-2` d\ :sup:`-1` - ``resp_auto_maint_dark`` - Mitochondrial respiration from :math:`C_{fol}` * - :math:`Ra_{maint}` - Autotrophic maintenance respiration - gC m\ :sup:`-2` d\ :sup:`-1` - ``resp_auto_maint`` - Includes :math:`Ra_{dark}` * - :math:`RhAe_{cwd}` - Aerobic heterotrophic respiration from :math:`C_{cwd}` - gC m\ :sup:`-2` d\ :sup:`-1` - ``ae_rh_cwd`` - * - :math:`DEC_{fol}` - Background foliar mortality - gC m\ :sup:`-2` d\ :sup:`-1` - ``fol2lit`` - :math:`C_{fol}` transferred to :math:`C_{lit}` due to mortality * - :math:`DECph_{fol}` - Phenological foliar mortality - gC m\ :sup:`-2` d\ :sup:`-1` - ``ph_fol2lit`` - :math:`C_{fol}` transferred to :math:`C_{lit}` due to phenological senescence * - :math:`DEC_{woo}` - Wood and coarse root mortality - gC m\ :sup:`-2` d\ :sup:`-1` - ``woo2cwd`` - :math:`C_{woo}` transferred to :math:`C_{cwd}` * - :math:`DEC_{roo}` - Fine root mortality - gC m\ :sup:`-2` d\ :sup:`-1` - ``roo2lit`` - :math:`C_{roo}` transferred to :math:`C_{lit}` * - :math:`DEC_{lab}` - Labile mortality - gC m\ :sup:`-2` d\ :sup:`-1` - ``lab2lit`` - :math:`C_{lab}` transferred to :math:`C_{lit}` * - :math:`DEC_{cwd}` - Coarse woody debris decomposition - gC m\ :sup:`-2` d\ :sup:`-1` - ``cwd2som`` - :math:`C_{cwd}` transferred to :math:`C_{som}` * - :math:`DEC_{lit}` - Litter decomposition - gC m\ :sup:`-2` d\ :sup:`-1` - ``lit2som`` - :math:`C_{lit}` transferred to :math:`C_{som}` * - :math:`DIS_{lab}` - :math:`C_{lab}` disturbance loss - gC m\ :sup:`-2` d\ :sup:`-1` - ``dist_lab`` - * - :math:`DIS_{fol}` - :math:`C_{fol}` disturbance loss - gC m\ :sup:`-2` d\ :sup:`-1` - ``dist_fol`` - * - :math:`DIS_{woo}` - :math:`C_{woo}` disturbance loss - gC m\ :sup:`-2` d\ :sup:`-1` - ``dist_woo`` - * - :math:`DIS_{roo}` - :math:`C_{roo}` disturbance loss - gC m\ :sup:`-2` d\ :sup:`-1` - ``dist_roo`` - * - :math:`FIR_{lab}` - :math:`C_{lab}` fire loss - gC m\ :sup:`-2` d\ :sup:`-1` - ``f_lab`` - Combustion loss to atmosphere * - :math:`FIR_{fol}` - :math:`C_{fol}` fire loss - gC m\ :sup:`-2` d\ :sup:`-1` - ``f_fol`` - Combustion loss to atmosphere * - :math:`FIR_{woo}` - :math:`C_{woo}` fire loss - gC m\ :sup:`-2` d\ :sup:`-1` - ``f_woo`` - Combustion loss to atmosphere * - :math:`FIR_{roo}` - :math:`C_{roo}` fire loss - gC m\ :sup:`-2` d\ :sup:`-1` - ``f_roo`` - Combustion loss to atmosphere * - :math:`FIR_{lit}` - :math:`C_{lit}` fire loss - gC m\ :sup:`-2` d\ :sup:`-1` - ``f_lit`` - Combustion loss to atmosphere * - :math:`FIR_{cwd}` - :math:`C_{cwd}` fire loss - gC m\ :sup:`-2` d\ :sup:`-1` - ``f_cwd`` - Combustion loss to atmosphere * - :math:`FIR_{som}` - :math:`C_{som}` fire loss - gC m\ :sup:`-2` d\ :sup:`-1` - ``f_som`` - Combustion loss to atmosphere * - :math:`FIRx_{lab}` - :math:`C_{lab}` fire mortality - gC m\ :sup:`-2` d\ :sup:`-1` - ``fx_lab2lit`` - Transfer of :math:`C_{lab}` to :math:`C_{lit}` due to fire * - :math:`FIRx_{fol}` - :math:`C_{fol}` fire mortality - gC m\ :sup:`-2` d\ :sup:`-1` - ``fx_fol2lit`` - Transfer of :math:`C_{fol}` to :math:`C_{lit}` due to fire * - :math:`FIRx_{roo}` - :math:`C_{roo}` fire mortality - gC m\ :sup:`-2` d\ :sup:`-1` - ``fx_roo2lit`` - Transfer of :math:`C_{roo}` to :math:`C_{lit}` due to fire * - :math:`FIRx_{woo}` - :math:`C_{woo}` fire mortality - gC m\ :sup:`-2` d\ :sup:`-1` - ``fx_woo2cwd`` - Transfer of :math:`C_{woo}` to :math:`C_{cwd}` due to fire * - :math:`FIRx_{cwd}` - :math:`C_{cwd}` fire mortality - gC m\ :sup:`-2` d\ :sup:`-1` - ``fx_cwd2som`` - Transfer of :math:`C_{cwd}` to :math:`C_{som}` due to fire * - :math:`FIRx_{lit}` - :math:`C_{lit}` fire mortality - gC m\ :sup:`-2` d\ :sup:`-1` - ``fx_lit2som`` - Transfer of :math:`C_{lit}` to :math:`C_{som}` due to fire * - :math:`RhAe_{lit}` - Aerobic heterotrophic respiration from :math:`C_{lit}` - gC m\ :sup:`-2` d\ :sup:`-1` - ``ae_rh_lit`` - * - :math:`RhAe_{som}` - Aerobic heterotrophic respiration from :math:`C_{som}` - gC m\ :sup:`-2` d\ :sup:`-1` - ``ae_rh_som`` - * - :math:`RhAe_{tot}` - Total heterotrophic respiration CO\ :sub:`2` flux - gC m\ :sup:`-2` d\ :sup:`-1` - ``rh_co2`` - Sum of :math:`RhAe_{cwd}`, :math:`RhAe_{lit}`, and :math:`RhAe_{som}` * - :math:`RhAn_{cwd}` - Anaerobic heterotrophic respiration from :math:`C_{cwd}` - gC m\ :sup:`-2` d\ :sup:`-1` - ``an_rh_cwd`` - * - :math:`RhAn_{lit}` - Anaerobic heterotrophic respiration from :math:`C_{lit}` - gC m\ :sup:`-2` d\ :sup:`-1` - ``an_rh_lit`` - * - :math:`RhAn_{som}` - Anaerobic heterotrophic respiration from :math:`C_{som}` - gC m\ :sup:`-2` d\ :sup:`-1` - ``an_rh_som`` - * - :math:`RhAn_{tot}` - Total heterotrophic respiration CH\ :sub:`4` flux - gC m\ :sup:`-2` d\ :sup:`-1` - ``rh_ch4`` - Sum of :math:`RhAn_{cwd}`, :math:`RhAn_{lit}`, and :math:`RhAn_{som}` * - :math:`Q_{surf}` - Surface H\ :sub:`2`\ O runoff - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``q_surf`` - * - :math:`Q_{ly1}` - Runoff from :math:`W_{ly1}` - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``q_ly1`` - * - :math:`Q_{ly2}` - Runoff from :math:`W_{ly2}` - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``q_ly2`` - * - :math:`Q_{ly3}` - Runoff from :math:`W_{ly3}` - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``q_ly3`` - * - :math:`Qx_{inf}` - Surface H\ :sub:`2`\ O infiltration to :math:`W_{ly1}` - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``infil`` - * - :math:`Qx_{ly1,2}` - Transfer from :math:`W_{ly1}` to :math:`W_{ly2}` - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``ly1xly2`` - Positive values indicate downward transfer * - :math:`Qx_{ly2,3}` - Transfer from :math:`W_{ly2}` to :math:`W_{ly3}` - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``ly2xly3`` - Positive values indicate downward transfer * - :math:`EQ_{ly1}` - Internal energy of :math:`Q_{ly1}` - J m\ :sup:`-2` d\ :sup:`-1` - ``q_ly1_e`` - Based on temperature of :math:`W_{ly1}` * - :math:`EQ_{ly2}` - Internal energy of :math:`Q_{ly2}` - J m\ :sup:`-2` d\ :sup:`-1` - ``q_ly2_e`` - Based on temperature of :math:`W_{ly2}` * - :math:`EQ_{ly3}` - Internal energy of :math:`Q_{ly3}` - J m\ :sup:`-2` d\ :sup:`-1` - ``q_ly2_e`` - Based on temperature of :math:`W_{ly2}` * - :math:`EQx_{inf}` - Internal energy of :math:`Qx_{inf}` - J m\ :sup:`-2` d\ :sup:`-1` - ``infil_e`` - Based on weighted average temperature of snow melt (273.15K) and rainfall (air temperature)'; * - :math:`EQx_{ly1,2}` - Internal energy of :math:`Qx_{ly1,2}` - J m\ :sup:`-2` d\ :sup:`-1` - ``ly1xly2_e`` - Based on temperature of donor pool (:math:`W_{ly1}` when :math:`Qx_{ly1,2}` is positive, :math:`W_{ly2}` when :math:`Qx_{ly1,2}` is negative) * - :math:`EQx_{ly2,3}` - Internal energy of :math:`Qx_{ly2,3}` - J m\ :sup:`-2` d\ :sup:`-1` - ``ly2xly3_e`` - Based on temperature of donor pool (:math:`W_{ly2}` when :math:`Qx_{ly2,3}` is positive, :math:`W_{ly3}` when :math:`Qx_{ly2,3}` is negative) * - :math:`EQthx_{ly1,2}` - Thermal condictivity between :math:`E_{ly1}` and :math:`E_{ly2}` - J m\ :sup:`-2` d\ :sup:`-1` - ``ly1xly2_th_e`` - * - :math:`EQthx_{ly2,3}` - Thermal condictivity between :math:`E_{ly2}` and :math:`E_{ly3}` - J m\ :sup:`-2` d\ :sup:`-1` - ``ly2xly3_th_e`` - * - :math:`E_{gh}` - Ground heat heat flux - J m\ :sup:`-2` d\ :sup:`-1` - ``gh_in`` - * - :math:`E_{geo}` - Geological heat flux - J m\ :sup:`-2` d\ :sup:`-1` - ``geological`` - * - :math:`Snow` - Snowfall - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``snowfall`` - Identical to :math:`P_{snow}` forcing * - :math:`Melt` - Snowmelt - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``melt`` - * - :math:`Subl` - Sublimation - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``sublimation`` - * - :math:`Ev` - Evaporation - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``evap`` - * - :math:`Tr_{ly1}` - Transpiration from :math:`W_{ly1}` - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``transp1`` - * - :math:`Tr_{ly2}` - Transpiration from :math:`W_{ly2}` - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``transp2`` - * - :math:`EEv` - Internal energy of :math:`Ev` - J m\ :sup:`-2` d\ :sup:`-1` - ``evap_e`` - * - :math:`ETr_{ly1}` - Internal energy of :math:`Tr_{ly1}` - J m\ :sup:`-2` d\ :sup:`-1` - ``transp1_e`` - * - :math:`ETr_{ly2}` - Internal energy of :math:`Tr_{ly2}` - J m\ :sup:`-2` d\ :sup:`-1` - ``transp2_e`` - * - :math:`SW_{in}` - Incoming shortwave radiation - W m\ :sup:`-2` - ``SWin`` - :math:`SSRD` forcing converted to W m\ :sup:`-2` * - :math:`LW_{in}` - Incoming longtwave radiation - W m\ :sup:`-2` - ``LWin`` - :math:`STRD` forcing converted to W m\ :sup:`-2` * - :math:`SW_{out}` - Outgoing shortwave radiation - W m\ :sup:`-2` - ``SWout`` - * - :math:`LW_{out}` - Outgoing longtwave radiation - W m\ :sup:`-2` - ``LWout`` - * - :math:`R_{net}` - Net radiation - W m\ :sup:`-2` - ``net_radiation`` - Defined as :math:`SW_{in} + LW_{in} - SW_{out} - LW_{out}` * - :math:`H` - Sensible heat flux - W m\ :sup:`-2` - ``sensible_heat`` - * - :math:`LE` - Latent heat flux - W m\ :sup:`-2` - ``latent_heat`` - * - :math:`G` - Ground heat flux - W m\ :sup:`-2` - ``ground_heat`` - .. * - :math:`Ra_{tot}` .. - Total autotrophic respiration .. - gC m\ :sup:`-2` d\ :sup:`-1` .. - `resp_auto` .. - Includes maintenance and growth respiration .. FLUX_INFO.NAME[F.gh_in]='Ground heat flux in converted units'; .. FLUX_INFO.ABBREVIATION[F.gh_in]='gh_in'; .. FLUX_INFO.UNITS[F.gh_in]='J/m2/day'; .. FLUX_INFO.DESCRIPTION[F.gh_in]='Ground heat flux in converted units'; .. FLUX_INFO.NAME[F.aetr]='Aerobic turnover scalar'; .. FLUX_INFO.ABBREVIATION[F.aetr]='aetr'; .. FLUX_INFO.UNITS[F.aetr]='scalar'; .. FLUX_INFO.DESCRIPTION[F.aetr]='Aerobic turnover scalar'; .. FLUX_INFO.NAME[F.antr]='Anaerobic turnover scalar'; .. FLUX_INFO.ABBREVIATION[F.antr]='antr'; .. FLUX_INFO.UNITS[F.antr]='scalar'; .. FLUX_INFO.DESCRIPTION[F.antr]='Anaerobic turnover scalar'; .. FLUX_INFO.NAME[F.an_co2_c_ratio]='Anaerobic CO2 C ratio'; .. FLUX_INFO.ABBREVIATION[F.an_co2_c_ratio]='an_co2_c_ratio'; .. FLUX_INFO.UNITS[F.an_co2_c_ratio]='fraction'; .. FLUX_INFO.DESCRIPTION[F.an_co2_c_ratio]='CO2 fraction in anaerobic C decomposition'; .. FLUX_INFO.NAME[F.an_ch4_c_ratio]='Anaerobic CH4 C ratio'; .. FLUX_INFO.ABBREVIATION[F.an_ch4_c_ratio]='an_ch4_c_ratio'; .. FLUX_INFO.UNITS[F.an_ch4_c_ratio]='fraction'; .. FLUX_INFO.DESCRIPTION[F.an_ch4_c_ratio]='CH4 fraction in anaerobic C decomposition'; .. FLUX_INFO.NAME[F.target_LAI]='Target leaf area index'; .. FLUX_INFO.ABBREVIATION[F.target_LAI]='target_LAI'; .. FLUX_INFO.UNITS[F.target_LAI]='m2/m2'; .. FLUX_INFO.DESCRIPTION[F.target_LAI]='Target LAI calculated based on KNORR phenology scheme influenced by water, light, and temperature. Coded in KNORR_ALLOCATION.c'; .. FLUX_INFO.NAME[F.dlambda_dt]='Delta leaf area index'; .. FLUX_INFO.ABBREVIATION[F.dlambda_dt]='dlambda_dt'; .. FLUX_INFO.UNITS[F.dlambda_dt]='m2/m2'; .. FLUX_INFO.DESCRIPTION[F.dlambda_dt]='Difference between Target leaf area index (target_LAI) and current leaf area index. Coded in KNORR_ALLOCATION.c '; .. FLUX_INFO.NAME[F.f_temp_thresh]='Temperature threshold'; .. FLUX_INFO.ABBREVIATION[F.f_temp_thresh]='f_temp_thresh'; .. FLUX_INFO.UNITS[F.f_temp_thresh]='fraction'; .. FLUX_INFO.DESCRIPTION[F.f_temp_thresh]='Fraction of plants within pixel able to grow foliage on temperature threshold. Coded in KNORR_ALLOCATION.c'; .. FLUX_INFO.NAME[F.f_dayl_thresh]='Daylight threshold'; .. FLUX_INFO.ABBREVIATION[F.f_dayl_thresh]='f_dayl_thresh'; .. FLUX_INFO.UNITS[F.f_dayl_thresh]='fraction'; .. FLUX_INFO.DESCRIPTION[F.f_dayl_thresh]='Fraction of plants within pixel able to grow foliage based on daylight threshold. Coded in KNORR_ALLOCATION.c'; .. FLUX_INFO.NAME[F.lai_fire]='Leaf area index fire loss'; .. FLUX_INFO.ABBREVIATION[F.lai_fire]='lai_fire'; .. FLUX_INFO.UNITS[F.lai_fire]='m2/m2'; .. FLUX_INFO.DESCRIPTION[F.lai_fire]='Leaf area index fire lost to fire'; .. FLUX_INFO.NAME[F.foliar_fire_frac]='C_fol fire loss fraction'; .. FLUX_INFO.ABBREVIATION[F.foliar_fire_frac]='foliar_fire_frac'; .. FLUX_INFO.UNITS[F.foliar_fire_frac]='fraction'; .. FLUX_INFO.DESCRIPTION[F.foliar_fire_frac]='Foliage pool lost due to fire'; .. FLUX_INFO.NAME[F.ets]='Total land-atmosphere water'; .. FLUX_INFO.ABBREVIATION[F.ets]='ets'; .. FLUX_INFO.UNITS[F.ets]='kgH2O/m2/day'; .. FLUX_INFO.DESCRIPTION[F.ets]='Total land-atmosphere water flux (evaporation + transpiration + sublimation)'; .. FLUX_INFO.NAME[F.beta_factor]='Stress scaling factor'; .. FLUX_INFO.ABBREVIATION[F.beta_factor]='beta_factor'; .. FLUX_INFO.UNITS[F.beta_factor]='fraction'; .. FLUX_INFO.DESCRIPTION[F.beta_factor]='Stress due to cold weather and water availability'; .. FLUX_INFO.NAME[F.soil_beta_factor]='H2O stress scaling factor'; .. FLUX_INFO.ABBREVIATION[F.soil_beta_factor]='soil_beta_factor'; .. FLUX_INFO.UNITS[F.soil_beta_factor]='fraction'; .. FLUX_INFO.DESCRIPTION[F.soil_beta_factor]='Stress due to soil water availability'; .. list-table:: Parameters :widths: 1 1 1 1 1 1 :header-rows: 1 * - Abbreviation - Description - Units - Code string - Prior range - Notes * - :math:`I_{max}` - Maximum infiltration capacity - mmH\ :sub:`2`\ O d\ :sup:`-1` - ``max_infil`` - :math:`[1,100]` - * - :math:`\kappa_0` - Saturated hydraulic conductivity - m s\ :sup:`-1` - ``hydr_cond`` - :math:`[10^{-9},10^{-4}]` - * - :math:`b` - Retention parameter - None - ``retention`` - :math:`[1.5,10]` - * - :math:`z_{ly1}` - :math:`W_{ly1}` depth - m - ``LY1_z`` - :math:`[0.01,1]` - * - :math:`z_{ly2}` - :math:`W_{ly2}` depth - m - ``LY2_z`` - :math:`[0.01,20]` - * - :math:`z_{ly3}` - :math:`W_{ly3}` depth - m - ``LY3_z`` - :math:`[0.01,100]` - * - :math:`p_{ly1}` - :math:`W_{ly1}` porosity - m\ :sup:`3` m\ :sup:`-3` - ``LY1_por`` - :math:`[0.2,0.8]` - * - :math:`p_{ly2}` - :math:`W_{ly2}` porosity - m\ :sup:`3` m\ :sup:`-3` - ``LY2_por`` - :math:`[0.2,0.8]` - * - :math:`p_{ly3}` - :math:`W_{ly3}` porosity - m\ :sup:`3` m\ :sup:`-3` - ``LY3_por`` - :math:`[0.2,0.8]` - * - :math:`\psi_{fc}` - Water potential at field capacity - -MPa - ``field_cap`` - :math:`[0.01,0.1]` - * - :math:`DF_{lit}` - Fraction of decomposed :math:`C_{lit}` transferred to :math:`C_{som}` - 1 - ``tr_lit2som`` - :math:`[0.01,0.99]` - * - :math:`DF_{cwd}` - Fraction of decomposed :math:`C_{cwd}` transferred to :math:`C_{som}` - 1 - ``tr_cwd2som`` - :math:`[0.01,0.99]` - * - :math:`K_{roo}` - Autotrophic maintenance respiration coefficient for roots at 25\ :math:`^{\circ}`\ C - d\ :sup:`-1` - ``rauto_mr_r`` - :math:`[10^{-4},10^{-2}]` - * - :math:`K_{woo}` - Autotrophic maintenance respiration coefficient for wood at 25\ :math:`^{\circ}`\ C - d\ :sup:`-1` - ``rauto_mr_w`` - :math:`[10^{-6},5 \times 10^{-5}]` - * - :math:`Q_{10}^{Ra}` - Autotrophic maintenance respiration Q\ :sub:`10` coefficient - 1 - ``rauto_mr_q10`` - :math:`[1,5]` - * - :math:`Q_{10}^{dark}` - Dark respiration Q\ :sub:`10` coefficient - 1 - ``rauto_mrd_q10`` - :math:`[1,5]` - * - :math:`\Gamma` - Growth yield - 1 - ``rauto_gr`` - :math:`[0.6,0.95]` - gC in new biomass per gC used for growth, see ``Cannell and Thornley 2000`` * - :math:`k_{woo}` - Background turnover rate of :math:`C_{woo}` - d\ :sup:`-1` - ``t_wood`` - :math:`[2.5\times 10^{-5},10^{-2}]` - * - :math:`k_{lab}` - Background turnover rate of :math:`C_{lab}` - d\ :sup:`-1` - ``t_lab`` - :math:`[10^{-4},10^{-2}]` - * - :math:`k_{roo}` - Background turnover rate of :math:`C_{roo}` - d\ :sup:`-1` - ``t_roo`` - :math:`[10^{-4},10^{-2}]` - * - :math:`k_{fol}` - Background turnover rate of :math:`C_{fol}` - d\ :sup:`-1` - ``t_fol`` - :math:`[6.8\times 10^{-4},3.34\times 10^{-2}]` - * - :math:`k_{lit}` - Background turnover rate of :math:`C_{lit}` - d\ :sup:`-1` - ``t_lit`` - :math:`[10^{-4},10^{-1}]` - ``check units???`` * - :math:`k_{cwd}` - Background turnover rate of :math:`C_{cwd}` - d\ :sup:`-1` - ``t_cwd`` - :math:`[5\times 10^{-5},5\times 10^{-2}]` - ``check units???`` * - :math:`k_{som}` - Background turnover rate of :math:`C_{som}` - d\ :sup:`-1` - ``t_som`` - :math:`[10^{-7},10^{-1}]` - ``check units???`` * - :math:`Q_{10}^{aer}` - Q\ :sub:`10` coefficient of aerobic heterotrphic respiration - 1 - ``Q10rhco2`` - :math:`[1,5]` - * - :math:`Q_{10}^{ana}` - Q\ :sub:`10` coefficient of anaerobic heterotrphic respiration - 1 - ``Q10ch4`` - :math:`[1,5]` - * - :math:`f_{CH_{4}}` - CH\ :sub:`4` to CO\ :sub:`2` conversion ratio - 1 - ``r_ch4`` - :math:`[0.001,0.9]` - * - :math:`LCMA` - Leaf carbon mass per area - gC m\ :sup:`-2` - ``LCMA`` - :math:`[5,200]` - * - :math:`i_{C_{lab}}` - Initial value of :math:`C_{lab}` - gC m\ :sup:`-2` - ``i_labile`` - :math:`[1,10^{5}]` - * - :math:`i_{C_{fol}}` - Initial value of :math:`C_{fol}` - gC m\ :sup:`-2` - ``i_foliar`` - :math:`[1,2\times 10^{3}]` - * - :math:`i_{C_{roo}}` - Initial value of :math:`C_{roo}` - gC m\ :sup:`-2` - ``i_root`` - :math:`[1,2\times 10^{3}]` - * - :math:`i_{C_{woo}}` - Initial value of :math:`C_{woo}` - gC m\ :sup:`-2` - ``i_wood`` - :math:`[1,10^{5}]` - * - :math:`i_{C_{cwd}}` - Initial value of :math:`C_{cwd}` - gC m\ :sup:`-2` - ``i_cwd`` - :math:`[1,10^{5}]` - * - :math:`i_{C_{lit}}` - Initial value of :math:`C_{lit}` - gC m\ :sup:`-2` - ``i_lit`` - :math:`[1,2\times 10^{3}]` - * - :math:`i_{C_{som}}` - Initial value of :math:`C_{som}` - gC m\ :sup:`-2` - ``i_som`` - :math:`[1,2\times 10^{5}]` - * - :math:`i_{\theta_{ly1}}` - Initial value of :math:`\theta_{ly1}` - 1 - ``i_LY1_SM`` - :math:`[0.01,1]` - * - :math:`i_{\theta_{ly2}}` - Initial value of :math:`\theta_{ly2}` - 1 - ``i_LY2_SM`` - :math:`[0.01,1]` - * - :math:`i_{\theta_{ly3}}` - Initial value of :math:`\theta_{ly3}` - 1 - ``i_LY3_SM`` - :math:`[0.01,1]` - * - :math:`i_{SWE}` - Initial value of :math:`\W_{swe}` - mm H\ :sub:`2`\ O - ``i_SWE`` - :math:`[10^{-6},10^{4}]` - * - :math:`i_{E_{ly1}}` - Initial value of :math:`E_{ly1}` - J mmH\ :sub:`2`\ O\ :sup:`-1` - ``i_LY1_E`` - :math:`[4.67\times 10^{5},1.11\times 10^{6}]` - ``Energy in 1mm H2O at -50C to 1mm H2O at +50C ?????`` * - :math:`i_{E_{ly2}}` - Initial value of :math:`E_{ly2}` - J mmH\ :sub:`2`\ O\ :sup:`-1` - ``i_LY2_E`` - :math:`[4.67\times 10^{5},1.11\times 10^{6}]` - ``Energy in 1mm H2O at -50C to 1mm H2O at +50C ?????`` * - :math:`i_{E_{ly3}}` - Initial value of :math:`E_{ly3}` - J mmH\ :sub:`2`\ O\ :sup:`-1` - ``i_LY3_E`` - :math:`[4.67\times 10^{5},1.11\times 10^{6}]` - ``Energy in 1mm H2O at -50C to 1mm H2O at +50C ?????`` * - :math:`VHC_{E_{ly1}}` - Volumetric heat capacity of :math:`E_{ly1}` - J K m\ :sup:`-3` - ``LY1_vhc`` - :math:`[1.3\times 10^{6},3\times 10^{6}]` - * - :math:`VHC_{E_{ly2}}` - Volumetric heat capacity of :math:`E_{ly2}` - J K m\ :sup:`-3` - ``LY2_vhc`` - :math:`[1.3\times 10^{6},3\times 10^{6}]` - * - :math:`VHC_{E_{ly3}}` - Volumetric heat capacity of :math:`E_{ly3}` - J K m\ :sup:`-3` - ``LY3_vhc`` - :math:`[1.3\times 10^{6},3\times 10^{6}]` - * - :math:`CF_{fol}` - Foliar combustion factor - 1 - ``cf_foliar`` - :math:`[0.01,1]` - * - :math:`CF_{lig}` - Ligneous combustion factor - 1 - ``cf_ligneous`` - :math:`[0.01,1]` - * - :math:`CF_{som}` - Soil combustion factor - 1 - ``cf_DOM`` - :math:`[0.01,1]` - * - :math:`r` - Resilience factor - 1 - ``resilience`` - :math:`[0.01,1]` - * - :math:`Q_{ex}` - Excess runoff factor - 1 - ``Q_excess`` - :math:`[0.01,1]` - * - :math:`g_{1}` - Medlyn :math:`g_{1}` parameter ``cite paper`` - 1 - ``Med_g1`` - :math:`[1.79,5.79]` - * - :math:`V_{cmax25}` - Maximum rate of RuBisCO carboxylization at 25\ :math:`^{\circ}`\ C - :math:`\mu`\ molCO\ :sub:`2` m\ :sup:`-2` s\ :sup:`-1` - ``Vcmax25`` - :math:`[1,150]` - * - :math:`Tmin_{min}` - Minimum cold temperature scaling factor - K - ``Tminmin`` - :math:`[258.15,273.15]` - ``cite Stetz paper`` * - :math:`Tmin_{max}` - Maximum cold temperature scaling factor - K - ``Tminmax`` - :math:`[273.15,288.15]` - ``cite Stetz paper`` * - :math:`T_{upp}` - Upper temperature limit for photosynthesis - K - ``Tupp`` - :math:`[249.15,318.15]` - * - :math:`T_{down}` - Lower temperature limit for photosynthesis - K - ``Tdown`` - :math:`[213.15,286.15]` - * - :math:`g_{a}` - Aerodynamic conductance - m s\ :sup:`-1` - ``ga`` - :math:`[10^{-3},10]` - * - :math:`\Omega` - Leaf clumping index - 1 - ``clumping`` - :math:`[0.35,1]` - * - :math:`\rho_{PAR}` - Reflectance for photosynthetically active radiation - 1 - ``leaf_refl_par`` - :math:`[0.01,0.5]` - * - :math:`\rho_{NIR}` - Reflectance for near infrared radiation - 1 - ``leaf_refl_nir`` - :math:`[0.3,0.7]` - * - :math:`sn_{1}` - Minimum temperature threshold for snow melt - K - ``min_melt`` - :math:`[263.15,283.15]` - * - :math:`sn_{2}` - Snowmelt slope - ``????`` - ``melt_slope`` - :math:`[10^{-5},1]` - * - :math:`sn_{3}` - Snow cover fraction scalar - ``????`` - ``scf_scalar`` - :math:`[10,10^{3}]` - * - :math:`S_{fv}` - Scalar for aerobic volumetric fraction - ``????`` - ``S_fv`` - :math:`[1,100]` - * - :math:`\theta_{opt}` - Optimum soil moisture for water scalar in heterotrophic respiration - 1 - ``thetas_opt`` - :math:`[0.2,1]` - * - :math:`F_{wc}` - water scaler fW value at the end point C - ``????`` - ``fwc`` - :math:`[0.01,1]` - * - :math:`Ev_{max}` - Maximum pan evaporation - mm d\ :sup:`-1` - ``maxPevap`` - :math:`[0.01,100]` - * - :math:`T_{\phi}` - Maximum temperature at leaf onset - K - ``T_phi`` - :math:`[268.15,323.15]` - * - :math:`T_{range}` - Spatial range of mean temperature at leaf onset - K - ``T_range`` - :math:`[0.1,10]` - * - :math:`\Lambda_{g}` - LAI linear growth constant - Per time-step - ``plgr`` - :math:`[0.001,0.5]` - * - :math:`K_{leaf}` - Inverse of leaf longevity during senescence period - Per time-step - ``k_leaf`` - :math:`[0.001,0.5]` - * - :math:`\Lambda_{max}` - Intrinsic maximum LAI - m\ :sup:`2` m\ :sup:`-2` - ``plgr`` - :math:`[0.1,10]` - * - :math:`\tau_{LAI}` - Target survival time for LAI under water-deficit conditions - d ``????`` - ``tau_W`` - :math:`[0.1,300]` - * - :math:`t_{c}` - Mean daylength at leaf shedding - hours of sunlight d\ :sup:`-1` - ``time_c`` - :math:`[2,22]` - * - :math:`t_{r}` - Spatial range of :math:`t_{c}` - hours of sunlight d\ :sup:`-1` - ``time_r`` - :math:`[0.1,6]` - * - :math:`T_{mem}` - Initial value of LAI temperature memory - K - ``init_T_mem`` - :math:`[268.14,323.15]` - * - :math:`\theta_{mem}` - Initial value of LAI water/structural memory - 1 - ``init_LAIW_mem`` - :math:`[0.1,1]` - * - :math:`\psi_{50}` - 50% stomatal closure water potential - -MPa - ``psi_50`` - :math:`[0.1,30]` - Water potential when soil-plant continuum is at 50% hydraulic conductivity due to stomatal closure * - :math:`\psi_{hmf}` - 50% mortality water potential - -MPa - ``psi_50`` - :math:`[0.1,30]` - Water potential triggering 50% biomass mortality due to cavitation * - :math:`\Beta_{plgr}` - Photosynthetic water stress logistic growth rate - None - ``beta_lgr`` - :math:`[4.1,50]` - * - :math:`\Beta_{mlgr}` - Mortality water stress logistic growth rate - None - ``beta_lgrHMF`` - :math:`[4.1,50]` - * - :math:`\phi_{rl}` - Root-to-leaf allocation ratio - 1 - ``phi_RL`` - :math:`[10^{-4},5]` - Ratio of carbon allocation to root per target foliar pool size * - :math:`\phi_{wl}` - Wood-to-leaf allocation ratio - 1 - ``phi_WL`` - :math:`[10^{-4},5]` - Ratio of carbon allocation to wood per target foliar pool size * - :math:`\kappa_{deep}` - Deep soil thermal conductivity - W m\ :sup:`-1` K\ :sup:`-1` - ``thermal_cond`` - :math:`[0.3,2]` - * - :math:`\kappa_{surf}` - Surface soil thermal conductivity - W m\ :sup:`-1` K\ :sup:`-1` - ``thermal_cond_surf`` - :math:`[0.03,2]` - * - :math:`Q_{10}^{gpp}` - Q\ :sub:`10` coefficient for :math:`GPP` - 1 - ``q10canopy`` - :math:`[1,5]` - * - :math:`RDSF` - ``Something about dark respiration??`` - ``???`` - ``canopyRdsf`` - :math:`[0.005,0.025]` - * - :math:`Es` - Sublimation rate - ``mm/day/SCF/kPha/(MJ/m2/d) ???`` - ``sublimation_rate`` - :math:`[0.001,10]` - * - :math:`f_{root}` - Root fraction of :math:`W_{ly2}` to :math:`W_{ly1}` - ``mm/day/SCF/kPha/(MJ/m2/d) ???`` - ``sublimation_rate`` - :math:`[0.001,1]` -